The UMD-THAP1 database: Insertion analysis



This option is used to check if a repeated sequence could be involved in the mutational event. In this hypothesis, a repeated sequence is created by the insertion process to complete a partially duplicated sequence.
For example the CGA sequence is inserted in the ctttctacgattaattaaggca and result in ctttctacgattaaCGAttaaggca. the repated sequence created by the insertion process is cgattaa (ctttctaCGATTAACGATTAAggca).
 

Total number of insertions: 4 (5 records)

Small insertions with known sequences: 4 (5 records)

Insertions involving repeated sequences: 3 (75 %) 

AA Position Mutation Repeated sequence Number of recordsInsertion / Repeated sequences
37 c.109dup GGGG
2

actcgacccagtctttgtaaagaatgggGaggcagctgtcagaagaaaaaactttaaacc
actcgacccagtctttgtaaagaatGGGGaggcagctgtcagaagaaaaaactttaaacc

172 c.514dup AAA
1

ctcaagaccgcacagcagcgatgcagaaAggcaagaacggcagcttgaaaaattaaagga
ctcaagaccgcacagcagcgatgcagAAAggcaagaacggcagcttgaaaaattaaagga

72 c.213dup AA
1

gctttaagagagagtgcaacaacaagttaActgaaagagaatgctgtgcccacaatattt
gctttaagagagagtgcaacaacaagttAActgaaagagaatgctgtgcccacaatattt